1	Original mapping provided by Array Vendor	Vendor mapping	1	\N
2	Raw value	Raw value	1	\N
3	Generalised log transformation based on VSN variance stabilised scores	VSN_GLOG	1	\N
7	Hidden Markov Model based predictions based on tiling array data	Nessie (TilingHMM)	1	\N
9	VISTA Enhancer Assay (http://enhancer.lbl.gov/)	VISTA	1	{"type" : "regulatory_regions", "colourset" : "synteny", "display" :"off"}
10	Supervised Hidden Markov Model	SupervisedHMM	1	\N
11	Remapping to new assembly performed by LiftOver	LiftOver	1	\N
12	Ratio generated by standard Sanger PCR array processing	SangerPCR	1	\N
13	Solexa clusters	Parzen	1	\N
14	Weighted mean standardisation using the one step Tukey Biweight algorithm	Tukey Biweight	1	\N
15	Window Interval	WindowInterval	1	\N
83	Probe alignment	Probe alignment	1	{"colourset" : "feature","type" : "_oligo","display" : "off","key" : "array_chip"}
84	Probe alignment	Probe alignment	1	{"colourset" : "feature","type" : "_oligo","display" : "off","key" : "array_chip"}
129	Microarray probes from manufacturers are aligned to the genome by Ensembl, if the probe sequences are provided. The mapping is a two-step procedure outlined <a href="/info/genome/microarray_probe_set_mapping.html">here</a>.	Probe2Transcript Annotation	0	\N
25	{'reg_feats' => 'Features from <a href="/info/genome/funcgen/index.html" class="cp-external">Ensembl Regulatory Build</a>.'}	Regulatory Build	1	{"type" : "fg_regulatory_features", "name" : "Reg. Feats",  "display" :"off", "depth" : 10, "default" : {"contigviewbottom" : "normal", "generegview" : "normal"} }
33	SWEmbl_R0025_D150	SWEmbl	1	\N
18	SWEmbl Peak Caller	SWEmbl	1	\N
24	SWEmbl Peak Caller	SWEmbl	1	\N
32	SWEmbl Peak Caller	SWEmbl	1	\N
34	BWA single read alignment	BWA	1	\N
35	Filtered subset of Jaspar and Transfac TFBS PWM mappings	TFBS Motifs	1	\N
5	Genomic alignments for Affy arrays	AffyAlign	0	\N
37	Manual Annotation	Manual Annotation	1	\N
38	Import From Jaspar	Jaspar Matrix	1	\N
39	SWEMBL Peak Caller	SWEmbl	1	\N
40	SWEMBL Peak Caller	SWEmbl	1	\N
41	CCAT Peak Caller	CCAT	1	\N
42	Whole Genome Bisulphite Sequencing: 5 Methyl Cytosine (and 5hmC). Merged replicates.	WGBS	1	{}
43	Reduced Representation Bisulphite Sequencing: 5 Methyl Cytosine (and 5hmC). Merged replicates, filtered for a minimum of 10 reads	RRBS	1	{}
51	<a href="http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=tarbasev8/index">Tarbase</a> miRNA target predictions	TarBase	1	{"type" : "mirna_targets", "colourset" : "mirna", "display" : "off"}
54	Position Frequency Matrices from the <a href='http://jaspar.genereg.net/'>Jaspar Database</a> (5.0)	Jaspar	0	\N
49	Reduced Representation Bisulfite Sequencing	RRBS	1	\N
50	Whole-Genome Bisulfite Sequencing	WGBS	1	\N
45	Chromatin Immunoprecipitation Sequencing	ChIP-Seq	1	\N
46	DNase I hypersensitive sites sequencing	DNase-Seq	1	\N
48	Formaldehyde-Assisted Isolation of Regulatory Elements	FAIRE-Seq	1	\N
52	SWEmbl Peak Caller	SWEmbl	1	\N
53	SWEmbl Peak Caller with IDR peak filtering	SWEmbl IDR	1	\N
78	samtools flagstats run for qc purposes	samtools flagstats	0	\N
79	Computes enrichment and quality measures and fragment lengths for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data	phantom peak quality tools	0	\N
80	Computation of the proportion of reads in peaks	Proportion of reads in peaks	0	\N
81	Segmentation of an epigenome	Segmentation	1	\N
82	NGG CRISPR sites identified by the <a href="https://wge.stemcell.sanger.ac.uk/">Wellcome Trust Sanger Institute Genome Editing (WGE)</a> resource <a href="https://doi.org/10.1093/bioinformatics/btv308">https://doi.org/10.1093/bioinformatics/btv308</a>	CRISPR SpCas9	1	\N
94		Chance	0	\N